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tagwiki:workshop:past [2020/01/14 15:50]
funkyfinwhale [3. Barcelona (2019-Dec-08)]
tagwiki:workshop:past [2020/01/14 16:04] (current)
funkyfinwhale [4. Test (2020-Jan-14)]
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 +<​page-header>​
 +====== Workshop History ======
 +</​page-header>​
 +
 +====1. St. Andrews (2017-Aug-07)====
 +The first "​Analysis of data from high-resolution animal-borne tags" workshop took place in St. Andrews on 7-9th August 2017.  This 3-day course covered all aspects of tag calibration,​ data validation, data processing & quality checking, visualisation and statistical analysis. ​
 +
 +<​accordion collapsed="​true">​
 +<panel title="​a. St. Andrews (2017-Aug-07) day one">​
 +|<100% 12.5% 25% 12.5% 7.5% ->|
 +^Heading^Workshop materials^ Version ^ Size (KB)^Changelog^
 +|Welcome|{{ :​tagwiki:​tt01_agenda.pdf | Workshop Schedule}}| 2017-08-06|818||
 +|:::​|{{https://​www.st-andrews.ac.uk/​media/​university/​maps/​wwwmap.pdf| Map of St. Andrews}}|2017-08-06 |192 | |
 +|Lectures|{{ :​tagwiki:​lectures:​day1:​ttl001_sdr_intro.zip| Lecture 1 SDR Introduction}} |2017-08-07| 11,366 | |
 +|:::|{{ :​tagwiki:​lectures:​day1:​ttl002_mj_sensors.pptx| Lecture 2 MJ Sensors}} |2017-08-07| 7,991 | |
 +|:::|{{ :​tagwiki:​lectures:​day1:​ttl003_tm_tracking_a.zip| Lecture 3 TM Tracking}} |2017-08-07 12:45| 1,030 | UPDATED! |
 +|Practicals|{{ :​tagwiki:​practicals:​day1:​ttp001a_practical1_part1a.doc| Practical 1 Part 1 for Matlab & Octave users}}|2017-08-07 17:​29|66|UDPATED! With typos, bug fixes and additional information included |
 +|:::|{{ :​tagwiki:​practicals:​day1:​ttp001a_practical_1_part1_r.pdf| Practical 1 Part 1 for R users}}|2017-08-08 11:15|250| |
 +|:::|{{ :​tagwiki:​practicals:​day1:​ttp001b_practical1_part2.zip| Practical 1 Part 2}}|2017-08-07 20:​30|604|UPDATED! Bugs & typos in codes snippets have been removed. |
 +|Tag Tools|{{ :​tagwiki:​tagtools_matoct_20170807.zip| Tag Tools for Matlab & Octave}} |2017-08-07 |316| |
 +|:::|{{ :​tagwiki:​tagtools_0.0.0.9000.tar.gz|Tag Tools for R }} |2017-08-08 14:30 |739|UPDATED (Wednesday lunchtime)! With bug fixes for spherical_cal |
 +|Updated tools|{{ :​tagwiki:​tool_updates:​msa.m|msa}} |2017-08-07 14:18 |1KB|UPDATED! Matlab & Octave function MSA download and copy over the exisiting MSA function in the **~/​processing/​** directory. Updated to use function sens2var. |
 +|:::|{{ :​tagwiki:​tool_updates:​find_dives.m|find_dives}} |2017-08-07 15:22 |1KB|UPDATED! Matlab & Octave function find_dives download and copy over the exisiting find_dives function in the **~/​processing/​** directory. |
 +|:::|{{ :​tagwiki:​tool_updates:​m2h.m|m2h}} |2017-08-07 15:22 |1KB|UPDATED! Matlab & Octave function m2h download and copy over the exisiting m2h function in the **~/​processing/​** directory. |
 +|Example datasets|{{ :​tagwiki:​testdata_20170807.zip |Test Datasets}}| 2017-08-07| 87,316 | |
 +|Updated datasets|{{:​tagwiki:​data_updates:​mn12_186a_raw.zip|mn12_186a_raw}}|2017-08-07 16:51| 3,324 |UPDATED! All Sensor channels now included. Corrupted file replaced. Un-zip the data and write over the existing data.|
 +|:::​|{{:​tagwiki:​data_updates:​testset3.zip|testset3}}|2017-08-07 16:15| 18,432 |UPDATED! Un-zip and Overwrite the existing data.|
 +</​panel>​
 +
 +<panel title="​b. St. Andrews (2017-Aug-08) day two"> ​
 +|<100% 12.5% 25% 12.5% 7.5% ->|
 +^Heading^Workshop materials^ Version ^ Size (KB)^Changelog^
 +|Lectures|{{ :​tagwiki:​lectures:​day2:​ttl004_mj_signalproc.pptx|001 Signal Processing (Mark Johnson)}}|2017-08-08 08:50| 8,872|NEW! |
 +|:::|{{ :​tagwiki:​lectures:​day2:​ttp005a_sdr_changepoints.zip|002a Change Points (Stacy De Ruiter)}}|2017-08-08 10:45|1,636 |NEW!|
 +|:::|{{ :​tagwiki:​lectures:​day2:​ttl005b_ds_eventdetect.zip|002b Event detection (David Sweeney)}}|2017-08-08 10:45|1,212 |NEW!|
 +|:::|{{ :​tagwiki:​lectures:​day2:​ttl006_mj_movment.pptx|003 Measuring movement (Mark Johnson)}}|2017-08-08 12:30|8,634 |NEW!|
 +|Practicals|{{ :​tagwiki:​practicals:​day2:​ttp002_practical2.doc|002 Practical 2 for Matlab & Octave (Mark Johnson)}} |2017-08-08 11:​00|53|NEW!|
 +|:::|{{ :​tagwiki:​practicals:​day2:​ttp002_practical2_rversion.pdf|002 Practical 2 R version (Mark Johnson translated by Stacy)}} |2017-08-08 14:​20|53|NEW!|
 +|Tag Tools| | || |
 +|Updated tools|{{ :​tagwiki:​tool_updates:​dsf.m|dsf}} |2017-08-08 16:​41|1KB|UPDATED! Matlab & Octave only! Old tool was calling speclev and not spectrum_level. DTag users with DTAG-2 tools already installed would not have noticed an error. Please download the updated file and overwrite the exisiting dsf.m file in your *~/​processing/​* path. |
 +|Example datasets|| |  | |
 +|Updated datasets||| ||
 +</​panel>​
 +
 +<panel title="​c. St. Andrews (2017-Aug-09) day three"> ​
 +|<100% 12.5% 25% 12.5% 7.5% ->|
 +^Heading^Workshop materials^ Version ^ Size (KB)^Changelog^
 +|Lectures|{{ :​tagwiki:​lectures:​day3:​ttl_007_sdr_statistics.pdf|001 Statistical analysis (Tiago Marques, Stacy De Ruiter)}}|2017-08-09 09:10| 7,726 |NEW! |
 +|:::|{{ :​tagwiki:​lectures:​day3:​ttl008_si_inferring_behaviour.pptx|002 Inferring behaviour (Saana Isojunno)}}|2017-08-09 09:30| 4,390 |NEW! |
 +|Practicals|{{ :​tagwiki:​practicals:​day3:​ttp003_practical3.pdf|003 Events, states & statistics}}|2017-08-09 09:00| 52 |NEW!|
 +|Updated tools|{{:​tagwiki:​tool_updates:​stats.zip|Matlab & Octave Stats tools}} |2017-08-09 10:30| 122 |UPDATED! MATLAB & OCTAVE only. Updated to include **ALL** current statistics tools. Download the stats.zip and extract the files into your folder **~/​tagtools/​stats/​** and overwrite the existing stats tools. |
 +|:::|{{ :​tagwiki:​tool_updates:​dive_stats.m|dive_stats}} |2017-08-09 |1KB|UPDATED! Matlab & Octave function dive_stats download and copy over the exisiting function in the **~/​processing/​** directory. |
 +|:::|{{ :​tagwiki:​tool_updates:​rotation_test.m|rotation_test}} |2017-08-09 |1KB|UPDATED! Matlab & Octave function rotation_test download and copy over the exisiting function in the **~/​stats/​** directory. |
 +|:::|{{ :​tagwiki:​tool_updates:​acf.m|acf}} |2017-08-09 |1KB|UPDATED! Matlab & Octave function acf download and copy over the exisiting function in the **~/​stats/​** directory. |
 +|Example datasets|{{:​tagwiki:​data_updates:​practical3data.zip|Data for Practical 3}}|2017-08-09 |  |NEW! |
 +|Updated datasets||| ||
 +
 + </​panel>​
 +</​accordion>​
 +---------
 +
 +====2. Halifax (2017-Oct-28)====
 +"Tag data processing and visulisation",​ World Marine Mammal Conference, Halifax (2017-Oct-28).
 +---------
 +
 +====3. Barcelona (2019-Dec-08)====
 +"​Analysis of data from high-resolution biologging tags", World Marine Mammal Conference, Barcelona (2019-Dec-28). ​
 +
 +<​accordion collapsed="​true">​
 +<panel title="​a. Barcelona (2019-Dec-08)">​
 +<WRAP group>
 +<WRAP half column>
 +<WRAP center round box 97.5%>
 +=== "​Analysis of data from high-resolution biologging tags" === 
 +---------
 +== Location: World Marine Mammal Conference, Barcelona ==
 +== Venue: Room 129 (P1 level), Centre Convencions Internacional Barcelona (CCIB) ==
 +== Date: Sunday 8 December 2019 ==
 +== Status: Full ==
 +---------
 +
 +== Workshop Agenda: ==
 +
 +  * 08:​30-09:​00:​ Brief introduction of the presenters and of the participants.
 +  * 9:​00-10:​00: ​ Topic 1: Organizing tag data and metadata in archive-ready format. ​
 +  * 10:​00-10:​30 ​     Coffee break. ​
 +  * 10.30-11.00 ​     Topic 1 continuation. ​
 +  * 11:​00-12:​30 ​     Topic 2: Sensors, calibration and orientation (tag frame to animal frame). ​
 +  * 12.30-14:​00 ​     Lunch break
 +  * 14:​00-15:​00 ​     Topic 3: Measuring movement: an introduction to the different products of acceleration,​ low, medium and high frequency accelerations.
 +  * 15:​00-15:​30 ​     Coffee break
 +  * 15:​30-16:​30 ​     Topic 3 continuation.
 +  * 16:​30-17:​30 ​     Topic 4. Dead-reckoning and analytical methods. ​
 +  * Wrap up and beer-discussion outside the venue, location TBD.  ​
 +</​WRAP>​
 +</​WRAP>​
 +
 +<WRAP half column>
 +<WRAP center round box 97.5%>
 +=== Materials for Workshop Participants ===
 +
 +== Software ==
 +Participants should have their own machine with either **R**, **Matlab**, or **Octave** installed. We assume a basic familiarity with at least one of the three platforms. R users may also want to install RStudio as an interface to R.
 +
 +  * [[https://​www.r-project.org/​|R]] and [[https://​rstudio.com/​products/​rstudio/​download/#​download|RStudio]] are both free to download.
 +  * [[https://​www.mathworks.com/​products/​get-matlab.html|Matlab]] is paid software that requires a license.  ​
 +  * [[https://​www.gnu.org/​software/​octave/​download.html |Octave]], which works very similarly to Matlab, is also free to download. ​
 +=== Workshop Bundle ===
 +
 +**{{ :​tagwiki:​wmmc_workshop_all:​wmmc-2019-workshop-materials.zip |All materials for the WMMC workshop}} (tools, lecture slides, practicals, and example datasets) are bundled together as a zip archive.**
 +
 +  * Current development versions of tools are also available in our [[https://​github.com/​stacyderuiter/​TagTools|TagTools github repo]]
 +  * Matlab users should add the file {{ :​tagwiki:​wmmc_workshop_all:​nearest.m |nearest.m}} to their matlab tool folder!
 +
 +=== Post-Workshop Survey ===
 +At the close of the workshop, a [[https://​calvin.co1.qualtrics.com/​jfe/​form/​SV_8f7Y4qsCp9W8ubP |satisfaction survey]] for participants will be linked here.
 +
 +</​WRAP>​
 +</​WRAP>​
 +</​WRAP>​
 +</​panel>​
 +</​accordion>​
 +
 +/*====4. Test (2020-Jan-14)====
 +"​Analysis of data from high-resolution biologging tags", World Marine Mammal Conference, Barcelona (2019-Dec-08).
 +
 +<​accordion collapsed="​true">​
 +<panel title="​Test (2020-Jan-14)">​
 +
 +<​accordion collapsed="​true">​
 +<panel title="​a. Lectures (2020-Jan-14)">​
 +</​panel>​
 +</​accordion>​
 +
 +<​accordion collapsed="​true">​
 +<panel title="​b. Practicals (2020-Jan-14)">​
 +</​panel>​
 +</​accordion>​
 +
 +<​accordion collapsed="​true">​
 +<panel title="​c. Data (2020-Jan-14)">​
 +</​panel>​
 +</​accordion>​
 +
 +</​panel>​
 +</​accordion>​*/​
 +
 +/* ^ Date ^ Title ^ Location ^ Availability ^
 +|07-09 August 2017 | "​Analysis of data from high-resolution animal-borne tags "| CREEM, St. Andrews, U.K. | Full |
 +|28th October 2017 | "Tag data processing and visualization"​| 22nd Biennial Conference on the Biology of Marine Mammals, Halifax, NS | Places availalble|
 +*/
 +
  
  • tagwiki/workshop/past.txt
  • Last modified: 2020/01/14 16:04
  • by funkyfinwhale